Tools: tl

Generate Report

tools.generate_report.analise_LR(input[, ...])

Core engine to generate report.

Analysis Core

Single Condition

tools.Single_Condition.read_lr_single_condition(...)

This function loads the single conditions LR outputs and use it to generate the report data and it`s object.

Comparitive Condition

tools.Comparative_condition.create_diff_table(...)

Read the lrobject and generate the comparative tables

Utils

tools.utils.ranking(annData, out_path, ...)	Ranking the most interactive gene (ligand or receptor)
tools.utils.ranking_net(graph[, mode])	Network Ranking method
tools.utils.comparative_pagerank(rankings, ...)	Ranking the most interactive gene (ligand or receptor)
tools.utils.comparative_med(rankings, ...)	Delta betweenness the most interactive gene (ligand or receptor)
tools.utils.add_node_type(df)	Adding genetype to the gene names to distinguish biological function
tools.utils.fisher_test_cci(annData, ...[, ...])	Evaluate Differences in the edge proportion
tools.utils.mannwhitneyu_test_cci(annData, ...)	Evaluate Differences in the edge strength
tools.utils.filtered_graphs(annData, out_path)	Filter comparison graphs by statistics

lrobject

tools.lrobject